IL_7SYM_075

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCCCGUC*GUCGUAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|G|1702
7SYM|1|2|C|1703
7SYM|1|2|C|1704
7SYM|1|2|C|1705
7SYM|1|2|G|1706
7SYM|1|2|U|1707
7SYM|1|2|C|1708
*
7SYM|1|2|G|1826
7SYM|1|2|U|1827
7SYM|1|2|C|1828
7SYM|1|2|G|1829
7SYM|1|2|U|1830
7SYM|1|2|A|1831
7SYM|1|2|A|1832
7SYM|1|2|C|1833

Current chains

Chain 2

18S rRNA

Nearby chains

Chain n

60s ribosomal protein l41