IL_7SYM_088

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|z|C|255
7SYM|1|z|G|256
7SYM|1|z|A|257
7SYM|1|z|G|258
7SYM|1|z|U|259
7SYM|1|z|A|260
7SYM|1|z|G|261
*
7SYM|1|z|C|272
7SYM|1|z|G|273
7SYM|1|z|A|274
7SYM|1|z|A|275
7SYM|1|z|A|276
7SYM|1|z|G|277

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA