IL_7SYM_089

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UAUGGUUCCUUU*AUUCGAACG

Length

21 nucleotides

Bulged bases

7SYM|1|2|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|U|110
7SYM|1|2|A|111
7SYM|1|2|U|112
7SYM|1|2|G|113
7SYM|1|2|G|114
7SYM|1|2|U|115
7SYM|1|2|U|116
7SYM|1|2|C|117
7SYM|1|2|C|118
7SYM|1|2|U|119
7SYM|1|2|U|120
7SYM|1|2|U|121
*
7SYM|1|2|A|343
7SYM|1|2|U|344
7SYM|1|2|U|345
7SYM|1|2|C|346
7SYM|1|2|G|347
7SYM|1|2|A|348
7SYM|1|2|A|349
7SYM|1|2|C|350
7SYM|1|2|G|351

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

eS8

Chain M

uS17