IL_7SYM_096

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAGGUUCGAAG*CGUAGUUC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|G|1041
7SYM|1|2|A|1042
7SYM|1|2|G|1043
7SYM|1|2|G|1044
7SYM|1|2|U|1045
7SYM|1|2|U|1046
7SYM|1|2|C|1047
7SYM|1|2|G|1048
7SYM|1|2|A|1049
7SYM|1|2|A|1050
7SYM|1|2|G|1051
*
7SYM|1|2|C|1067
7SYM|1|2|G|1068
7SYM|1|2|U|1069
7SYM|1|2|A|1070
7SYM|1|2|G|1071
7SYM|1|2|U|1072
7SYM|1|2|U|1073
7SYM|1|2|C|1074

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain P

uS11

Chain b

eS26 (S26)