IL_7SYM_097

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

7SYM|1|2|C|1215, 7SYM|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|C|1213
7SYM|1|2|A|1214
7SYM|1|2|C|1215
7SYM|1|2|C|1216
7SYM|1|2|A|1217
*
7SYM|1|2|U|1681
7SYM|1|2|C|1682
7SYM|1|2|C|1683
7SYM|1|2|C|1684
7SYM|1|2|U|1685
7SYM|1|2|G|1686

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain d

eS28