IL_7SYM_099

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GACAGGAUUGACAG*CUUUCUCGAUUC

Length

26 nucleotides

Bulged bases

7SYM|1|2|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|G|1281
7SYM|1|2|A|1282
7SYM|1|2|C|1283
7SYM|1|2|A|1284
7SYM|1|2|G|1285
7SYM|1|2|G|1286
7SYM|1|2|A|1287
7SYM|1|2|U|1288
7SYM|1|2|U|1289
7SYM|1|2|G|1290
7SYM|1|2|A|1291
7SYM|1|2|C|1292
7SYM|1|2|A|1293
7SYM|1|2|G|1294
*
7SYM|1|2|C|1305
7SYM|1|2|U|1306
7SYM|1|2|U|1307
7SYM|1|2|U|1308
7SYM|1|2|C|1309
7SYM|1|2|U|1310
7SYM|1|2|C|1311
7SYM|1|2|G|1312
7SYM|1|2|A|1313
7SYM|1|2|U|1314
7SYM|1|2|U|1315
7SYM|1|2|C|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a