IL_7SYM_111

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CAUGCU*AGAGG

Length

11 nucleotides

Bulged bases

7SYM|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|C|1395
7SYM|1|2|A|1396
7SYM|1|2|U|1397
7SYM|1|2|G|1398
7SYM|1|2|C|1399
7SYM|1|2|U|1400
*
7SYM|1|2|A|1446
7SYM|1|2|G|1447
7SYM|1|2|A|1448
7SYM|1|2|G|1449
7SYM|1|2|G|1450

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain h

RACK1