IL_7SYM_112

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UACG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYM_112 not in the Motif Atlas

Geometric match to IL_8C3A_403

Geometric discrepancy: 0.3626

The information below is about IL_8C3A_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86374.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7SYM|1|2|U|1560
7SYM|1|2|A|1561
7SYM|1|2|C|1562
7SYM|1|2|G|1563
*
7SYM|1|2|C|1572
7SYM|1|2|G|1573
7SYM|1|2|C|1574
7SYM|1|2|G|1575

Current chains

Chain 2

18S rRNA

Nearby chains

Chain U

eS19