IL_7SYN_031

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_031 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.3161

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7SYN|1|2|G|563
7SYN|1|2|A|564
7SYN|1|2|G|565
*
7SYN|1|2|C|585
7SYN|1|2|G|586
7SYN|1|2|A|587
7SYN|1|2|G|588
7SYN|1|2|G|589
7SYN|1|2|A|590
7SYN|1|2|U|591
7SYN|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30