IL_7SYN_033

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

7SYN|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYN|1|2|A|599
7SYN|1|2|G|600
7SYN|1|2|G|601
7SYN|1|2|G|602
7SYN|1|2|C|603
7SYN|1|2|A|604
7SYN|1|2|A|605
7SYN|1|2|G|606
7SYN|1|2|U|607
7SYN|1|2|C|608
*
7SYN|1|2|G|635
7SYN|1|2|C|636
7SYN|1|2|U|637

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain E

uS3

Chain K

uS4

Chain Y

uS12

Chain f

eS30