IL_7SYN_039

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_039 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3735

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7SYN|1|2|G|692
7SYN|1|2|A|693
7SYN|1|2|G|694
7SYN|1|2|C|695
*
7SYN|1|2|G|731
7SYN|1|2|U|732
7SYN|1|2|C|733
7SYN|1|2|C|734

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

uS8