IL_7SYN_070

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGGAGCGAUUUGUC*GAUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYN|1|2|G|1349
7SYN|1|2|U|1350
7SYN|1|2|G|1351
7SYN|1|2|G|1352
7SYN|1|2|A|1353
7SYN|1|2|G|1354
7SYN|1|2|C|1355
7SYN|1|2|G|1356
7SYN|1|2|A|1357
7SYN|1|2|U|1358
7SYN|1|2|U|1359
7SYN|1|2|U|1360
7SYN|1|2|G|1361
7SYN|1|2|U|1362
7SYN|1|2|C|1363
*
7SYN|1|2|G|1375
7SYN|1|2|A|1376
7SYN|1|2|U|1377
7SYN|1|2|A|1378
7SYN|1|2|A|1379
7SYN|1|2|C|1380

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain D

40S ribosomal protein S2

Chain S

eS17

Chain W

eS21