IL_7SYN_082

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_082 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2482

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

7SYN|1|2|C|1713
7SYN|1|2|U|1714
7SYN|1|2|A|1715
7SYN|1|2|C|1716
*
7SYN|1|2|G|1817
7SYN|1|2|A|1818
7SYN|1|2|A|1819
7SYN|1|2|G|1820

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

eL41