IL_7SYN_090

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCC*GAG

Length

6 nucleotides

Bulged bases

7SYN|1|2|A|1781

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_090 not in the Motif Atlas

Geometric match to IL_4WF9_089

Geometric discrepancy: 0.3324

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7SYN|1|2|C|1751
7SYN|1|2|C|1752
7SYN|1|2|C|1753
*
7SYN|1|2|G|1780
7SYN|1|2|A|1781
7SYN|1|2|G|1782

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6