IL_7SYN_103

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGUUCGAAG*CGUAGUU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYN|1|2|A|1042
7SYN|1|2|G|1043
7SYN|1|2|G|1044
7SYN|1|2|U|1045
7SYN|1|2|U|1046
7SYN|1|2|C|1047
7SYN|1|2|G|1048
7SYN|1|2|A|1049
7SYN|1|2|A|1050
7SYN|1|2|G|1051
*
7SYN|1|2|C|1067
7SYN|1|2|G|1068
7SYN|1|2|U|1069
7SYN|1|2|A|1070
7SYN|1|2|G|1071
7SYN|1|2|U|1072
7SYN|1|2|U|1073

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26