IL_7SYN_108

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

7SYN|1|2|U|1585, 7SYN|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYN|1|2|G|1541
7SYN|1|2|C|1542
7SYN|1|2|U|1543
7SYN|1|2|C|1544
7SYN|1|2|A|1545
7SYN|1|2|G|1546
7SYN|1|2|C|1547
7SYN|1|2|G|1548
7SYN|1|2|U|1549
7SYN|1|2|G|1550
*
7SYN|1|2|C|1582
7SYN|1|2|C|1583
7SYN|1|2|G|1584
7SYN|1|2|U|1585
7SYN|1|2|U|1586
7SYN|1|2|G|1587
7SYN|1|2|A|1588
7SYN|1|2|A|1589
7SYN|1|2|C|1590
7SYN|1|2|C|1591
7SYN|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

eS25

Chain e

uS14