IL_7SYO_010

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

7SYO|1|2|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|G|130
7SYO|1|2|A|141
7SYO|1|2|C|142
7SYO|1|2|U|143
7SYO|1|2|U|144
*
7SYO|1|2|A|175
7SYO|1|2|U|176
7SYO|1|2|G|177
7SYO|1|2|C|178
7SYO|1|2|C|179
7SYO|1|2|G|180
7SYO|1|2|A|181
7SYO|1|2|C|182

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6