IL_7SYO_013

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_013 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3359

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7SYO|1|2|C|188
7SYO|1|2|U|189
7SYO|1|2|G|190
7SYO|1|2|A|191
7SYO|1|2|C|192
*
7SYO|1|2|G|207
7SYO|1|2|G|208
7SYO|1|2|A|209
7SYO|1|2|U|210
7SYO|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8