IL_7SYO_025

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AAUAC*GUAAUU

Length

11 nucleotides

Bulged bases

7SYO|1|2|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|A|528
7SYO|1|2|A|529
7SYO|1|2|U|530
7SYO|1|2|A|531
7SYO|1|2|C|532
*
7SYO|1|2|G|552
7SYO|1|2|U|553
7SYO|1|2|A|554
7SYO|1|2|A|555
7SYO|1|2|U|556
7SYO|1|2|U|557

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30