IL_7SYO_033

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGUAGUU*AAUCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|C|676
7SYO|1|2|G|677
7SYO|1|2|U|678
7SYO|1|2|A|679
7SYO|1|2|G|680
7SYO|1|2|U|681
7SYO|1|2|U|682
*
7SYO|1|2|A|1023
7SYO|1|2|A|1024
7SYO|1|2|U|1025
7SYO|1|2|C|1026
7SYO|1|2|A|1027
7SYO|1|2|A|1028
7SYO|1|2|G|1029

Current chains

Chain 2

18S rRNA

Nearby chains

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12