IL_7SYO_051

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAUGC*GGGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|C|1098
7SYO|1|2|G|1099
7SYO|1|2|A|1100
7SYO|1|2|U|1101
7SYO|1|2|G|1102
7SYO|1|2|C|1103
*
7SYO|1|2|G|1129
7SYO|1|2|G|1130
7SYO|1|2|G|1131
7SYO|1|2|C|1132
7SYO|1|2|A|1133
7SYO|1|2|G|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain C

eS1

Chain O

uS15

Chain S

eS17

Chain b

eS26

Chain c

eS27