IL_7SYO_054

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGCACCA*UCCCUGCC

Length

15 nucleotides

Bulged bases

7SYO|1|2|C|1215, 7SYO|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|G|1211
7SYO|1|2|G|1212
7SYO|1|2|C|1213
7SYO|1|2|A|1214
7SYO|1|2|C|1215
7SYO|1|2|C|1216
7SYO|1|2|A|1217
*
7SYO|1|2|U|1681
7SYO|1|2|C|1682
7SYO|1|2|C|1683
7SYO|1|2|C|1684
7SYO|1|2|U|1685
7SYO|1|2|G|1686
7SYO|1|2|C|1687
7SYO|1|2|C|1688

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain G

uS7

Chain R

uS9

Chain V

uS10

Chain b

eS26

Chain d

eS28