IL_7SYO_091

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAUGGUUCCUUU*AUUCGAACGUC

Length

25 nucleotides

Bulged bases

7SYO|1|2|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|G|108
7SYO|1|2|U|109
7SYO|1|2|U|110
7SYO|1|2|A|111
7SYO|1|2|U|112
7SYO|1|2|G|113
7SYO|1|2|G|114
7SYO|1|2|U|115
7SYO|1|2|U|116
7SYO|1|2|C|117
7SYO|1|2|C|118
7SYO|1|2|U|119
7SYO|1|2|U|120
7SYO|1|2|U|121
*
7SYO|1|2|A|343
7SYO|1|2|U|344
7SYO|1|2|U|345
7SYO|1|2|C|346
7SYO|1|2|G|347
7SYO|1|2|A|348
7SYO|1|2|A|349
7SYO|1|2|C|350
7SYO|1|2|G|351
7SYO|1|2|U|352
7SYO|1|2|C|353

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain J

eS8

Chain M

uS17