IL_7SYO_106
3D structure
- PDB id
- 7SYO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CGUU*ACAG
- Length
- 8 nucleotides
- Bulged bases
- 7SYO|1|2|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYO_106 not in the Motif Atlas
- Geometric match to IL_4N0T_004
- Geometric discrepancy: 0.3316
- The information below is about IL_4N0T_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99358.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
7SYO|1|2|C|1337
7SYO|1|2|G|1338
7SYO|1|2|U|1339
7SYO|1|2|U|1340
*
7SYO|1|2|A|1487
7SYO|1|2|C|1488
7SYO|1|2|A|1489
7SYO|1|2|G|1490
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain E
- uS3
- Chain V
- uS10
- Chain e
- uS14
Coloring options: