IL_7SYO_109

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGCCUACCC*GGUAACC

Length

17 nucleotides

Bulged bases

7SYO|1|2|A|1580, 7SYO|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|G|1550
7SYO|1|2|U|1551
7SYO|1|2|G|1552
7SYO|1|2|C|1553
7SYO|1|2|C|1554
7SYO|1|2|U|1555
7SYO|1|2|A|1556
7SYO|1|2|C|1557
7SYO|1|2|C|1558
7SYO|1|2|C|1559
*
7SYO|1|2|G|1576
7SYO|1|2|G|1577
7SYO|1|2|U|1578
7SYO|1|2|A|1579
7SYO|1|2|A|1580
7SYO|1|2|C|1581
7SYO|1|2|C|1582

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain L

eS10

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain e

uS14