IL_7SYO_117

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGGAGCGAUUUGUC*GAUAA

Length

19 nucleotides

Bulged bases

7SYO|1|2|U|1360

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|U|1350
7SYO|1|2|G|1351
7SYO|1|2|G|1352
7SYO|1|2|A|1353
7SYO|1|2|G|1354
7SYO|1|2|C|1355
7SYO|1|2|G|1356
7SYO|1|2|A|1357
7SYO|1|2|U|1358
7SYO|1|2|U|1359
7SYO|1|2|U|1360
7SYO|1|2|G|1361
7SYO|1|2|U|1362
7SYO|1|2|C|1363
*
7SYO|1|2|G|1375
7SYO|1|2|A|1376
7SYO|1|2|U|1377
7SYO|1|2|A|1378
7SYO|1|2|A|1379

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain D

40S ribosomal protein S2

Chain S

eS17

Chain W

eS21