IL_7SYO_118

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

7SYO|1|2|C|1403, 7SYO|1|2|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_118 not in the Motif Atlas

Homologous match to IL_8P9A_445

Geometric discrepancy: 0.4717

The information below is about IL_8P9A_445

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

7SYO|1|2|A|1402
7SYO|1|2|C|1403
7SYO|1|2|U|1404
7SYO|1|2|A|1405
*
7SYO|1|2|U|1441
7SYO|1|2|U|1442
7SYO|1|2|C|1443
7SYO|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain h

Receptor for Activated C Kinase 1 (RACK1)