IL_7SYP_012

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

7SYP|1|2|C|142, 7SYP|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYP|1|2|G|130
7SYP|1|2|A|141
7SYP|1|2|C|142
7SYP|1|2|U|143
7SYP|1|2|U|144
*
7SYP|1|2|A|175
7SYP|1|2|U|176
7SYP|1|2|G|177
7SYP|1|2|C|178
7SYP|1|2|C|179
7SYP|1|2|G|180
7SYP|1|2|A|181
7SYP|1|2|C|182

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6