3D structure

PDB id
7SYP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UGUG*UAGA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYP_014 not in the Motif Atlas
Geometric match to IL_1D4R_001
Geometric discrepancy: 0.2326
The information below is about IL_1D4R_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

7SYP|1|2|U|152
7SYP|1|2|G|153
7SYP|1|2|U|154
7SYP|1|2|G|155
*
7SYP|1|2|U|163
7SYP|1|2|A|164
7SYP|1|2|G|165
7SYP|1|2|A|166

Current chains

Chain 2
18S rRNA

Nearby chains

Chain H
eS6
Chain Z
eS24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0825 s