IL_7SYP_031

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

7SYP|1|2|G|588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_031 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.2844

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7SYP|1|2|G|563
7SYP|1|2|A|564
7SYP|1|2|G|565
*
7SYP|1|2|C|585
7SYP|1|2|G|586
7SYP|1|2|A|587
7SYP|1|2|G|588
7SYP|1|2|G|589
7SYP|1|2|A|590
7SYP|1|2|U|591
7SYP|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30