IL_7SYP_033
3D structure
- PDB id
- 7SYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 7SYP|1|2|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYP_033 not in the Motif Atlas
- Geometric match to IL_4V88_470
- Geometric discrepancy: 0.2641
- The information below is about IL_4V88_470
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7SYP|1|2|A|599
7SYP|1|2|G|600
7SYP|1|2|G|601
7SYP|1|2|G|602
7SYP|1|2|C|603
7SYP|1|2|A|604
7SYP|1|2|A|605
7SYP|1|2|G|606
7SYP|1|2|U|607
7SYP|1|2|C|608
*
7SYP|1|2|G|635
7SYP|1|2|C|636
7SYP|1|2|U|637
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 7
- HCV IRES partially loaded mRNA portion
- Chain D
- uS5
- Chain K
- uS4
- Chain f
- eS30
Coloring options: