IL_7SYP_040

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGCG*CCCG

Length

9 nucleotides

Bulged bases

7SYP|1|2|C|753

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_040 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3843

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7SYP|1|2|C|750
7SYP|1|2|G|751
7SYP|1|2|G|752
7SYP|1|2|C|753
7SYP|1|2|G|754
*
7SYP|1|2|C|790
7SYP|1|2|C|791
7SYP|1|2|C|792
7SYP|1|2|G|793

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6