IL_7SYP_048

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7SYP|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_048 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.1287

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7SYP|1|2|G|924
7SYP|1|2|G|925
7SYP|1|2|A|926
7SYP|1|2|C|927
*
7SYP|1|2|G|1014
7SYP|1|2|U|1015
7SYP|1|2|U|1016
7SYP|1|2|U|1017
7SYP|1|2|U|1018

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain c

eS27