IL_7SYP_065

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUGACAG*CUUUCUCGAU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYP|1|2|A|1287
7SYP|1|2|U|1288
7SYP|1|2|U|1289
7SYP|1|2|G|1290
7SYP|1|2|A|1291
7SYP|1|2|C|1292
7SYP|1|2|A|1293
7SYP|1|2|G|1294
*
7SYP|1|2|C|1305
7SYP|1|2|U|1306
7SYP|1|2|U|1307
7SYP|1|2|U|1308
7SYP|1|2|C|1309
7SYP|1|2|U|1310
7SYP|1|2|C|1311
7SYP|1|2|G|1312
7SYP|1|2|A|1313
7SYP|1|2|U|1314

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain Q

uS19

Chain e

uS14

Chain g

eS31