IL_7SYP_078

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_078 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1168

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7SYP|1|2|G|1604
7SYP|1|2|G|1605
7SYP|1|2|G|1606
7SYP|1|2|A|1607
7SYP|1|2|U|1608
7SYP|1|2|C|1609
7SYP|1|2|G|1610
*
7SYP|1|2|C|1629
7SYP|1|2|A|1630
7SYP|1|2|U|1631
7SYP|1|2|G|1632
7SYP|1|2|A|1633
7SYP|1|2|A|1634
7SYP|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain T

uS13

Chain U

eS19