IL_7SYP_101

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUCCA*UUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_101 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3751

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7SYP|1|2|G|565
7SYP|1|2|U|566
7SYP|1|2|C|567
7SYP|1|2|C|568
7SYP|1|2|A|569
*
7SYP|1|2|U|581
7SYP|1|2|U|582
7SYP|1|2|A|583
7SYP|1|2|A|584
7SYP|1|2|C|585

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24