IL_7SYP_108

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

7SYP|1|2|U|1585, 7SYP|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYP|1|2|G|1541
7SYP|1|2|C|1542
7SYP|1|2|U|1543
7SYP|1|2|C|1544
7SYP|1|2|A|1545
7SYP|1|2|G|1546
7SYP|1|2|C|1547
7SYP|1|2|G|1548
7SYP|1|2|U|1549
7SYP|1|2|G|1550
*
7SYP|1|2|C|1582
7SYP|1|2|C|1583
7SYP|1|2|G|1584
7SYP|1|2|U|1585
7SYP|1|2|U|1586
7SYP|1|2|G|1587
7SYP|1|2|A|1588
7SYP|1|2|A|1589
7SYP|1|2|C|1590
7SYP|1|2|C|1591
7SYP|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

eS25

Chain e

uS14