IL_7SYQ_012

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

7SYQ|1|2|C|142, 7SYQ|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|G|130
7SYQ|1|2|A|141
7SYQ|1|2|C|142
7SYQ|1|2|U|143
7SYQ|1|2|U|144
*
7SYQ|1|2|A|175
7SYQ|1|2|U|176
7SYQ|1|2|G|177
7SYQ|1|2|C|178
7SYQ|1|2|C|179
7SYQ|1|2|G|180
7SYQ|1|2|A|181
7SYQ|1|2|C|182

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6