IL_7SYQ_022

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7SYQ|1|2|U|368, 7SYQ|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_022 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2716

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7SYQ|1|2|U|366
7SYQ|1|2|U|367
7SYQ|1|2|U|368
7SYQ|1|2|C|369
7SYQ|1|2|G|370
7SYQ|1|2|A|371
*
7SYQ|1|2|U|393
7SYQ|1|2|G|394

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17