IL_7SYQ_031

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUCCA*UUAACGAGGAUC

Length

19 nucleotides

Bulged bases

7SYQ|1|2|G|588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|G|563
7SYQ|1|2|A|564
7SYQ|1|2|G|565
7SYQ|1|2|U|566
7SYQ|1|2|C|567
7SYQ|1|2|C|568
7SYQ|1|2|A|569
*
7SYQ|1|2|U|581
7SYQ|1|2|U|582
7SYQ|1|2|A|583
7SYQ|1|2|A|584
7SYQ|1|2|C|585
7SYQ|1|2|G|586
7SYQ|1|2|A|587
7SYQ|1|2|G|588
7SYQ|1|2|G|589
7SYQ|1|2|A|590
7SYQ|1|2|U|591
7SYQ|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24

Chain f

eS30