IL_7SYQ_037

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAGUU*AAUCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|C|676
7SYQ|1|2|G|677
7SYQ|1|2|U|678
7SYQ|1|2|A|679
7SYQ|1|2|G|680
7SYQ|1|2|U|681
7SYQ|1|2|U|682
*
7SYQ|1|2|A|1023
7SYQ|1|2|A|1024
7SYQ|1|2|U|1025
7SYQ|1|2|C|1026
7SYQ|1|2|A|1027
7SYQ|1|2|A|1028
7SYQ|1|2|G|1029

Current chains

Chain 2

18S rRNA

Nearby chains

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12