IL_7SYQ_040

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACU*GGAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_040 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3147

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

7SYQ|1|2|A|802
7SYQ|1|2|C|803
7SYQ|1|2|U|804
*
7SYQ|1|2|G|859
7SYQ|1|2|G|860
7SYQ|1|2|A|861
7SYQ|1|2|A|862
7SYQ|1|2|U|863

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS7

Chain M

uS17

Chain X

uS8