IL_7SYQ_074

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

7SYQ|1|2|C|1553, 7SYQ|1|2|A|1580, 7SYQ|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|G|1550
7SYQ|1|2|U|1551
7SYQ|1|2|G|1552
7SYQ|1|2|C|1553
7SYQ|1|2|C|1554
7SYQ|1|2|U|1555
7SYQ|1|2|A|1556
7SYQ|1|2|C|1557
7SYQ|1|2|C|1558
*
7SYQ|1|2|G|1577
7SYQ|1|2|U|1578
7SYQ|1|2|A|1579
7SYQ|1|2|A|1580
7SYQ|1|2|C|1581
7SYQ|1|2|C|1582

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain L

eS10

Chain R

uS9

Chain V

uS10

Chain e

uS14