IL_7SYQ_075

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UACG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_075 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3219

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7SYQ|1|2|U|1560
7SYQ|1|2|A|1561
7SYQ|1|2|C|1562
7SYQ|1|2|G|1563
*
7SYQ|1|2|C|1572
7SYQ|1|2|G|1573
7SYQ|1|2|C|1574
7SYQ|1|2|G|1575

Current chains

Chain 2

18S rRNA

Nearby chains

Chain U

eS19