IL_7SYQ_079

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCUA*UAAAAG

Length

11 nucleotides

Bulged bases

7SYQ|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|C|1708
7SYQ|1|2|G|1709
7SYQ|1|2|C|1710
7SYQ|1|2|U|1711
7SYQ|1|2|A|1712
*
7SYQ|1|2|U|1821
7SYQ|1|2|A|1822
7SYQ|1|2|A|1823
7SYQ|1|2|A|1824
7SYQ|1|2|A|1825
7SYQ|1|2|G|1826

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Eukaryotic translation initiation factor 1A, X-chromosomal

Chain Y

uS12

Chain n

eL41

Chain z

Internal ribosome entry site; IRES