IL_7SYQ_085

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_085 not in the Motif Atlas

Geometric match to IL_4E48_003

Geometric discrepancy: 0.0875

The information below is about IL_4E48_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7SYQ|1|2|C|1739
7SYQ|1|2|C|1740
7SYQ|1|2|U|1741
*
7SYQ|1|2|A|1793
7SYQ|1|2|C|1794
7SYQ|1|2|G|1795

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8