IL_7SYQ_104

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

7SYQ|1|2|U|1585, 7SYQ|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|G|1541
7SYQ|1|2|C|1542
7SYQ|1|2|U|1543
7SYQ|1|2|C|1544
7SYQ|1|2|A|1545
7SYQ|1|2|G|1546
7SYQ|1|2|C|1547
7SYQ|1|2|G|1548
7SYQ|1|2|U|1549
7SYQ|1|2|G|1550
*
7SYQ|1|2|C|1582
7SYQ|1|2|C|1583
7SYQ|1|2|G|1584
7SYQ|1|2|U|1585
7SYQ|1|2|U|1586
7SYQ|1|2|G|1587
7SYQ|1|2|A|1588
7SYQ|1|2|A|1589
7SYQ|1|2|C|1590
7SYQ|1|2|C|1591
7SYQ|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

eS25

Chain e

uS14