IL_7SYQ_105

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_105 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.1566

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7SYQ|1|2|G|1702
7SYQ|1|2|C|1703
7SYQ|1|2|C|1704
7SYQ|1|2|C|1705
*
7SYQ|1|2|G|1829
7SYQ|1|2|U|1830
7SYQ|1|2|A|1831
7SYQ|1|2|A|1832
7SYQ|1|2|C|1833

Current chains

Chain 2

18S rRNA

Nearby chains

Chain n

eL41

Chain z

Internal ribosome entry site; IRES