IL_7SYQ_107

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGGAU*AGAAGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|U|1741
7SYQ|1|2|C|1742
7SYQ|1|2|G|1743
7SYQ|1|2|G|1744
7SYQ|1|2|A|1745
7SYQ|1|2|U|1746
*
7SYQ|1|2|A|1788
7SYQ|1|2|G|1789
7SYQ|1|2|A|1790
7SYQ|1|2|A|1791
7SYQ|1|2|G|1792
7SYQ|1|2|A|1793

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8