IL_7SYQ_114

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACAGGAUUGACAG*CUUUCUCGAUU

Length

24 nucleotides

Bulged bases

7SYQ|1|2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|A|1282
7SYQ|1|2|C|1283
7SYQ|1|2|A|1284
7SYQ|1|2|G|1285
7SYQ|1|2|G|1286
7SYQ|1|2|A|1287
7SYQ|1|2|U|1288
7SYQ|1|2|U|1289
7SYQ|1|2|G|1290
7SYQ|1|2|A|1291
7SYQ|1|2|C|1292
7SYQ|1|2|A|1293
7SYQ|1|2|G|1294
*
7SYQ|1|2|C|1305
7SYQ|1|2|U|1306
7SYQ|1|2|U|1307
7SYQ|1|2|U|1308
7SYQ|1|2|C|1309
7SYQ|1|2|U|1310
7SYQ|1|2|C|1311
7SYQ|1|2|G|1312
7SYQ|1|2|A|1313
7SYQ|1|2|U|1314
7SYQ|1|2|U|1315

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain Q

uS19

Chain e

uS14

Chain g

eS31